librostlab-blast
1.0.1
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Here is a list of all class members with links to the classes they belong to:
- b -
basic_symbol() :
rostlab::blast::parser::basic_symbol< Base >
begin :
rostlab::blast::location
,
rostlab::blast::stack< T, S >
bit_score :
rostlab::blast::hsp
,
rostlab::blast::oneline
BLAST_VERSION :
rostlab::blast::parser::token
blast_version :
rostlab::blast::result
by_type() :
rostlab::blast::parser::by_type
- c -
clear() :
rostlab::blast::stack< T, S >
column :
rostlab::blast::position
columns() :
rostlab::blast::location
,
rostlab::blast::position
const_iterator :
rostlab::blast::stack< T, S >
CONVERGED :
rostlab::blast::parser::token
converged :
rostlab::blast::result
- d -
DATABASECOLON :
rostlab::blast::parser::token
db_name :
rostlab::blast::result
db_nletter :
rostlab::blast::result
db_nseq :
rostlab::blast::result
DBL :
rostlab::blast::parser::token
debug_level() :
rostlab::blast::parser
debug_level_type :
rostlab::blast::parser
debug_stream() :
rostlab::blast::parser
desc :
rostlab::blast::hit
,
rostlab::blast::oneline
dval :
rostlab::blast::parser::semantic_type
- e -
e_value :
rostlab::blast::hsp
,
rostlab::blast::oneline
ECompoAdjustModes :
rostlab::blast::hsp
eCompoForceFullMatrixAdjust :
rostlab::blast::hsp
eCompositionBasedStats :
rostlab::blast::hsp
eCompositionMatrixAdjust :
rostlab::blast::hsp
empty :
rostlab::blast::parser::by_type
,
rostlab::blast::result
end :
rostlab::blast::location
END :
rostlab::blast::parser::token
end() :
rostlab::blast::stack< T, S >
eNoCompositionBasedStats :
rostlab::blast::hsp
eNumCompoAdjustModes :
rostlab::blast::hsp
error() :
rostlab::blast::parser
,
rostlab::blast::parser_driver
EXPECTEQ :
rostlab::blast::parser::token
- f -
filename :
rostlab::blast::position
FRAMEEQ :
rostlab::blast::parser::token
- g -
gaps :
rostlab::blast::hsp
GAPSEQ :
rostlab::blast::parser::token
- h -
hit() :
rostlab::blast::hit
hit_cnt :
rostlab::blast::round
hit_idx :
rostlab::blast::round
hits :
rostlab::blast::result
hsp() :
rostlab::blast::hsp
hsps :
rostlab::blast::hit
- i -
identities :
rostlab::blast::hsp
IDENTITIESEQ :
rostlab::blast::parser::token
initialize() :
rostlab::blast::location
,
rostlab::blast::position
INT :
rostlab::blast::parser::token
iterator :
rostlab::blast::stack< T, S >
ival :
rostlab::blast::parser::semantic_type
- k -
kind_type :
rostlab::blast::parser::by_type
- l -
length :
rostlab::blast::hit
line :
rostlab::blast::position
lines() :
rostlab::blast::location
,
rostlab::blast::position
location() :
rostlab::blast::location
,
rostlab::blast::parser::basic_symbol< Base >
,
rostlab::blast::parser::syntax_error
location_type :
rostlab::blast::parser
- m -
match_line :
rostlab::blast::hsp
methfromstr() :
rostlab::blast::hsp
method :
rostlab::blast::hsp
METHODCOLON :
rostlab::blast::parser::token
methodstr() :
rostlab::blast::hsp
move() :
rostlab::blast::parser::basic_symbol< Base >
,
rostlab::blast::parser::by_type
- n -
name :
rostlab::blast::hit
,
rostlab::blast::oneline
NOHITS :
rostlab::blast::parser::token
noidx :
rostlab::blast::round
- o -
oneline() :
rostlab::blast::oneline
oneline_cnt :
rostlab::blast::round
ONELINE_DESC_HEADER :
rostlab::blast::parser::token
oneline_idx :
rostlab::blast::round
oneline_new_cnt :
rostlab::blast::round
oneline_new_idx :
rostlab::blast::round
onelines :
rostlab::blast::result
operator bool() :
rostlab::blast::result
operator[]() :
rostlab::blast::slice< T, S >
,
rostlab::blast::stack< T, S >
- p -
parse() :
rostlab::blast::parser
,
rostlab::blast::parser_driver
parser() :
rostlab::blast::parser
parser_driver() :
rostlab::blast::parser_driver
parser_error() :
rostlab::blast::parser_error
pop() :
rostlab::blast::stack< T, S >
position() :
rostlab::blast::position
positives :
rostlab::blast::hsp
POSITIVESEQ :
rostlab::blast::parser::token
push() :
rostlab::blast::stack< T, S >
- q -
q_ali :
rostlab::blast::hsp
q_desc :
rostlab::blast::result
q_end :
rostlab::blast::hsp
q_frame :
rostlab::blast::hsp
q_length :
rostlab::blast::result
q_name :
rostlab::blast::result
q_start :
rostlab::blast::hsp
q_strand :
rostlab::blast::hsp
QUERYCOLON :
rostlab::blast::parser::token
QUERYEQ :
rostlab::blast::parser::token
- r -
raw_score :
rostlab::blast::hsp
REFERENCE :
rostlab::blast::parser::token
references :
rostlab::blast::result
RESFROMROUND :
rostlab::blast::parser::token
result() :
rostlab::blast::parser_driver
,
rostlab::blast::result
result_type :
rostlab::blast::parser_driver
rostlab::blast::parser :
rostlab::blast::parser_driver
round() :
rostlab::blast::round
rounds :
rostlab::blast::result
- s -
s_ali :
rostlab::blast::hsp
s_end :
rostlab::blast::hsp
s_frame :
rostlab::blast::hsp
s_start :
rostlab::blast::hsp
s_strand :
rostlab::blast::hsp
SBJCTCOLON :
rostlab::blast::parser::token
SCOREEQ :
rostlab::blast::parser::token
SEARCHING :
rostlab::blast::parser::token
SEQ_FOUND_AGAIN :
rostlab::blast::parser::token
SEQ_FOUND_NEW :
rostlab::blast::parser::token
set_debug_level() :
rostlab::blast::parser
set_debug_stream() :
rostlab::blast::parser
size() :
rostlab::blast::stack< T, S >
slice() :
rostlab::blast::slice< T, S >
stack() :
rostlab::blast::stack< T, S >
step() :
rostlab::blast::location
STRANDEQ :
rostlab::blast::parser::token
STRING :
rostlab::blast::parser::token
super_type :
rostlab::blast::parser::basic_symbol< Base >
sval :
rostlab::blast::parser::semantic_type
symbol_number_type :
rostlab::blast::parser
symbol_type :
rostlab::blast::parser
syntax_error() :
rostlab::blast::parser::syntax_error
- t -
TAIL :
rostlab::blast::parser::token
tail :
rostlab::blast::result
token() :
rostlab::blast::parser::by_type
token_number_type :
rostlab::blast::parser
token_type :
rostlab::blast::parser
trace_scanning() :
rostlab::blast::parser_driver
type :
rostlab::blast::parser::by_type
type_get() :
rostlab::blast::parser::by_type
- v -
value :
rostlab::blast::parser::basic_symbol< Base >
- y -
yytokentype :
rostlab::blast::parser::token
- ~ -
~basic_symbol() :
rostlab::blast::parser::basic_symbol< Base >
~hit() :
rostlab::blast::hit
~hsp() :
rostlab::blast::hsp
~oneline() :
rostlab::blast::oneline
~parser() :
rostlab::blast::parser
~parser_driver() :
rostlab::blast::parser_driver
~result() :
rostlab::blast::result
~round() :
rostlab::blast::round
Generated on Mon Apr 14 2014 15:42:52 for librostlab-blast by
1.8.6