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elxAdvancedAffineTransform.h
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1 /*=========================================================================
2  *
3  * Copyright UMC Utrecht and contributors
4  *
5  * Licensed under the Apache License, Version 2.0 (the "License");
6  * you may not use this file except in compliance with the License.
7  * You may obtain a copy of the License at
8  *
9  * http://www.apache.org/licenses/LICENSE-2.0.txt
10  *
11  * Unless required by applicable law or agreed to in writing, software
12  * distributed under the License is distributed on an "AS IS" BASIS,
13  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14  * See the License for the specific language governing permissions and
15  * limitations under the License.
16  *
17  *=========================================================================*/
18 #ifndef __elxAdvancedAffineTransform_H_
19 #define __elxAdvancedAffineTransform_H_
20 
21 #include "elxIncludes.h" // include first to avoid MSVS warning
25 
26 namespace elastix
27 {
28 
76 template< class TElastix >
79  typename elx::TransformBase< TElastix >::CoordRepType,
80  elx::TransformBase< TElastix >::FixedImageDimension >,
81  public elx::TransformBase< TElastix >
82 {
83 public:
84 
91  typedef itk::SmartPointer< Self > Pointer;
92  typedef itk::SmartPointer< const Self > ConstPointer;
93 
100 
102  itkNewMacro( Self );
103 
106 
111  elxClassNameMacro( "AffineTransform" );
112 
114  itkStaticConstMacro( SpaceDimension, unsigned int, Superclass2::FixedImageDimension );
115 
129 
143 
145  typedef typename FixedImageType::IndexType IndexType;
146  typedef typename IndexType::IndexValueType IndexValueType;
147  typedef typename FixedImageType::SizeType SizeType;
148  typedef typename FixedImageType::PointType PointType;
149  typedef typename FixedImageType::SpacingType SpacingType;
150  typedef typename FixedImageType::RegionType RegionType;
151  typedef typename FixedImageType::DirectionType DirectionType;
152 
153  //typedef CenteredTransformInitializer<
158 
161 
166  void BeforeRegistration( void ) override;
167 
183  virtual void InitializeTransform( void );
184 
192  virtual void SetScales( void );
193 
198  void ReadFromFile( void ) override;
199 
203  void WriteToFile( const ParametersType & param ) const override;
204 
209  const ParametersType & param, ParameterMapType * paramsMap ) const override;
210 
211 protected:
212 
217 
223  virtual bool ReadCenterOfRotationPoint( InputPointType & rotationPoint ) const;
224 
225 private:
226 
228  AdvancedAffineTransformElastix( const Self & ); // purposely not implemented
230  void operator=( const Self & ); // purposely not implemented
231 
233 
234 };
235 
236 } // end namespace elastix
237 
238 #ifndef ITK_MANUAL_INSTANTIATION
239 #include "elxAdvancedAffineTransform.hxx"
240 #endif
241 
242 #endif // end #ifndef __elxAdvancedAffineTransform_H_
A transform based on the itk::AdvancedMatrixOffsetTransformBase.
void WriteToFile(const ParametersType &param) const override
itk::SmartPointer< const Self > ConstPointer
itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > Superclass1
Superclass2::RegistrationPointer RegistrationPointer
Superclass1::OutputVnlVectorType OutputVnlVectorType
Superclass1::NumberOfParametersType NumberOfParametersType
void CreateTransformParametersMap(const ParametersType &param, ParameterMapType *paramsMap) const override
itkStaticConstMacro(SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
itk::AdvancedMatrixOffsetTransformBase< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension, elx::TransformBase< TElastix >::MovingImageDimension > AffineTransformType
Superclass2::CombinationTransformType CombinationTransformType
Superclass1::InputVnlVectorType InputVnlVectorType
Superclass2::ConfigurationPointer ConfigurationPointer
Superclass2::ConfigurationType ConfigurationType
Superclass1::InputCovariantVectorType InputCovariantVectorType
virtual bool ReadCenterOfRotationPoint(InputPointType &rotationPoint) const
Superclass1::OutputCovariantVectorType OutputCovariantVectorType
TransformInitializerType::Pointer TransformInitializerPointer
itk::CenteredTransformInitializer2< AffineTransformType, FixedImageType, MovingImageType > TransformInitializerType
A class that deals with user given parameters and command line arguments.
This class is the elastix base class for all Transforms.
Configuration::Pointer ConfigurationPointer
ElastixType::FixedImageType FixedImageType
ElastixType::ParameterMapType ParameterMapType
itk::WeakPointer< ElastixType > ElastixPointer
OptimizerType::ScalesType ScalesType
RegistrationType * RegistrationPointer
ElastixType::MovingImageType MovingImageType
ElastixType::CoordRepType CoordRepType
ElastixType::RegistrationBaseType RegistrationType
This class combines two transforms: an 'initial transform' with a 'current transform'.
Superclass::InputCovariantVectorType InputCovariantVectorType
Superclass::OutputVnlVectorType OutputVnlVectorType
Superclass::OutputCovariantVectorType OutputCovariantVectorType
Superclass::NumberOfParametersType NumberOfParametersType
Superclass::InputVnlVectorType InputVnlVectorType
Transform maps points, vectors and covariant vectors from an input space to an output space.
Superclass::ParametersType ParametersType
Superclass::InputPointType InputPointType
CenteredTransformInitializer2 is a helper class intended to initialize the center of rotation and the...


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